Run ensemble Summa model on HPC¶
Structure for Unifying Multiple Modeling Alternative (SUMMA) is a hydrologic modeling approach that is built on a common set of conservation equations and a common numerical solver, which together constitute the structural core of the model. Different modeling approaches can then be implemented within the structural core, enabling a controlled and systematic analysis of alternative modeling options, and providing insight for future model development.
This notebook demonstrates how to harmonize different libraries and tools provided in the CyberGIS-Jupyter environment to run a 75-member ensemble SUMMA model with a High Performance Computer (HPC) resource. The SUMMA model instance and data used in this notebook were adapted from a part of the Clark et al., (2015) study, and explored the impact of different stomatal resistance parameterizations on total evapotranspiration (ET) in the Reynolds Mountain East catchment in southwestern Idaho.
Clark, M. P., B. Nijssen, J. Lundquist, D. Kavetski, D. Rupp, R. Woods, E. Gutmann, A. Wood, D. Gochis, R. Rasmussen, D. Tarboton, V. Mahat, G. Flerchinger, and D. Marks, 2015: A unified approach for process-based hydrologic modeling: Part 2. Model implementation and example applications. Water Resources Research, 51, doi: 10.1002/2015WR017200
Retrieve a Summa model instance resource from HydroShare¶
In [1]:
resource_id = '1f3f310af8364d2aa3e6a9459152a21c'
In [2]:
import json
import os
from hs_restclient import HydroShare, HydroShareAuthBasic
auth = HydroShareAuthBasic("cybergis", "demo")
hs = HydroShare(auth=auth)
base_dir = os.path.abspath('/home/jovyan/work')
download_dir = os.path.join(base_dir, 'Downloads')
!mkdir -p {download_dir}
hs.getResource(resource_id, destination=download_dir, unzip=True)
Unzip model instance package¶
In [3]:
import os
#Unzip model file
model_folder_name = "SummaModel_ReynoldsAspenStand_StomatalResistance_sopron"
content_folder = os.path.join(download_dir ,"{}/{}/data/contents".format(resource_id, resource_id))
file_manger_rel_path = "settings/summa_fileManager_riparianAspenSimpleResistance.txt"
import tempfile
workspace_dir = os.path.join(base_dir, 'workspace')
!mkdir -p {workspace_dir}
unzip_dir = tempfile.mkdtemp(dir=workspace_dir)
!cd {content_folder} && unzip -o {model_folder_name}.zip -d {unzip_dir}
print("Unzipping Done")
Archive: SummaModel_ReynoldsAspenStand_StomatalResistance_sopron.zip creating: /home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/ creating: /home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/data/ creating: /home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/data/forcingData/ inflating: /home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/data/forcingData/forcing_above_aspen.nc inflating: /home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/data/reynolds_geojson_latlon.geojson creating: /home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/data/validationData/ inflating: /home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/data/validationData/ReynoldsCreek_eddyFlux.nc inflating: /home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/installTestCases_local.sh creating: /home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/output/ creating: /home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/ inflating: /home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/GENPARM.TBL creating: /home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/ inflating: /home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/dos2unix.sh inflating: /home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/Model_Output.txt inflating: /home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/summa_zBasinModelVarMeta.txt inflating: /home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/summa_zBasinParamMeta.txt inflating: /home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/summa_zCategoryMeta.txt inflating: /home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/summa_zForceMeta.txt inflating: /home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/summa_zLocalAttributeMeta.txt inflating: /home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/summa_zLocalModelIndexMeta.txt inflating: 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"Install" SUMMA model on Jupyter server (fix broken path in summa file_manager)¶
In [4]:
model_source_folder_path = os.path.join(unzip_dir, model_folder_name)
!cd {model_source_folder_path} && chmod +x ./installTestCases_local.sh
!cd {model_source_folder_path} && ./installTestCases_local.sh
TestCases installed
Use PySumma to build ensembles¶
In [5]:
# Create a empty ParamTrial.nc file (required by parameter ensemble)
import netCDF4 as nc
name = os.path.join(model_source_folder_path, 'settings/summa_zParamTrial_riparianAspen.nc')
print(name)
param_trial = nc.Dataset(name, "w", format="NETCDF3_CLASSIC")
param_trial.createDimension("hru", 1)
param_trial.close()
/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/summa_zParamTrial_riparianAspen.nc
In [6]:
import numpy as np
import json
from pysumma import ensemble
def safe_arange(start, stop, step):
a = np.arange(start, stop, step)
result =[]
for i in a:
par = round(i, 10)
result = np.append(result, par)
return result
# create ensemble
# different parameterizations
decision_options = {
"stomResist": ["BallBerry", "Jarvis", "simpleResistance"]
}
# different parameters
param_options = {
'rootDistExp': safe_arange(0.01, 1.00, 0.20),
'summerLAI': safe_arange(0.01, 10.00, 2.00)
}
config = ensemble.total_product(dec_conf=decision_options, param_conf=param_options)
# save ensemble info to json file
with open(os.path.join(model_source_folder_path, 'summa_options.json'), 'w') as outfile:
json.dump(config, outfile)
# check ensemble parameters
print("Number of ensemble runs: {}".format(len(config)))
print(json.dumps(config, indent=4, sort_keys=True)[:800])
print("...")
Number of ensemble runs: 75
{
"++BallBerry++rootDistExp=0.01++summerLAI=0.01++": {
"decisions": {
"stomResist": "BallBerry"
},
"parameters": {
"rootDistExp": 0.01,
"summerLAI": 0.01
}
},
"++BallBerry++rootDistExp=0.01++summerLAI=2.01++": {
"decisions": {
"stomResist": "BallBerry"
},
"parameters": {
"rootDistExp": 0.01,
"summerLAI": 2.01
}
},
"++BallBerry++rootDistExp=0.01++summerLAI=4.01++": {
"decisions": {
"stomResist": "BallBerry"
},
"parameters": {
"rootDistExp": 0.01,
"summerLAI": 4.01
}
},
"++BallBerry++rootDistExp=0.01++summerLAI=6.01++": {
"decisions": {
"stomRe
...
Submit model to XSEDE Comet HPC using CyberGIS-Jupyter tool¶
In [7]:
from cybergis import summaUI
s = summaUI(model_source_folder_path, file_manger_rel_path,
workspace_dir)
In [8]:
s.runSumma()
2019-12-20 21:48:57,630 [MainThread ] [INFO ] SSH logged into keeling.earth.illinois.edu as user cigi-gisolve 2019-12-20 21:48:57,639 [MainThread ] [INFO ] Uploading /home/jovyan/work/workspace/Summa_1576878535_f3a913df to /data/keeling/a/cigi-gisolve 2019-12-20 21:49:01,011 [MainThread ] [INFO ] Submitting Job summa.sbatch to queue 2019-12-20 21:49:01,347 [MainThread ] [INFO ] Remote Job ID assigned: 3462846 2019-12-20 21:49:04,862 [MainThread ] [INFO ] R 2019-12-20 21:49:08,381 [MainThread ] [INFO ] R 2019-12-20 21:49:11,852 [MainThread ] [INFO ] R 2019-12-20 21:49:15,308 [MainThread ] [INFO ] R 2019-12-20 21:49:18,763 [MainThread ] [INFO ] R 2019-12-20 21:49:22,230 [MainThread ] [INFO ] R 2019-12-20 21:49:25,688 [MainThread ] [INFO ] R 2019-12-20 21:49:29,173 [MainThread ] [INFO ] R 2019-12-20 21:49:32,620 [MainThread ] [INFO ] R 2019-12-20 21:49:36,084 [MainThread ] [INFO ] R 2019-12-20 21:49:39,544 [MainThread ] [INFO ] R 2019-12-20 21:49:43,004 [MainThread ] [INFO ] R 2019-12-20 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Check model output -- NetCDF files¶
In [11]:
# check output directory
job_dir = os.path.join(workspace_dir, "{}".format(s.job_local_id))
output_path = os.path.join(job_dir, "output")
# check SUMMA output file
name_list = os.listdir(output_path)
full_list = [os.path.join(output_path,i) for i in name_list if i.endswith(".nc")]
sorted_list = sorted(full_list)
for f in sorted_list:
print(f)
print("Number of NC files: {}".format(len(sorted_list)))
/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.01++summerLAI=0.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.01++summerLAI=2.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.01++summerLAI=4.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.01++summerLAI=6.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.01++summerLAI=8.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.21++summerLAI=0.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.21++summerLAI=2.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.21++summerLAI=4.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.21++summerLAI=6.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.21++summerLAI=8.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.41++summerLAI=0.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.41++summerLAI=2.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.41++summerLAI=4.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.41++summerLAI=6.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.41++summerLAI=8.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.61++summerLAI=0.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.61++summerLAI=2.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.61++summerLAI=4.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.61++summerLAI=6.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.61++summerLAI=8.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.81++summerLAI=0.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.81++summerLAI=2.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.81++summerLAI=4.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.81++summerLAI=6.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.81++summerLAI=8.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.01++summerLAI=0.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.01++summerLAI=2.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.01++summerLAI=4.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.01++summerLAI=6.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.01++summerLAI=8.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.21++summerLAI=0.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.21++summerLAI=2.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.21++summerLAI=4.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.21++summerLAI=6.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.21++summerLAI=8.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.41++summerLAI=0.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.41++summerLAI=2.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.41++summerLAI=4.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.41++summerLAI=6.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.41++summerLAI=8.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.61++summerLAI=0.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.61++summerLAI=2.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.61++summerLAI=4.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.61++summerLAI=6.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.61++summerLAI=8.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.81++summerLAI=0.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.81++summerLAI=2.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.81++summerLAI=4.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.81++summerLAI=6.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.81++summerLAI=8.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.01++summerLAI=0.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.01++summerLAI=2.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.01++summerLAI=4.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.01++summerLAI=6.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.01++summerLAI=8.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.21++summerLAI=0.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.21++summerLAI=2.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.21++summerLAI=4.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.21++summerLAI=6.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.21++summerLAI=8.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.41++summerLAI=0.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.41++summerLAI=2.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.41++summerLAI=4.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.41++summerLAI=6.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.41++summerLAI=8.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.61++summerLAI=0.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.61++summerLAI=2.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.61++summerLAI=4.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.61++summerLAI=6.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.61++summerLAI=8.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.81++summerLAI=0.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.81++summerLAI=2.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.81++summerLAI=4.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.81++summerLAI=6.01++_timestep.nc /home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.81++summerLAI=8.01++_timestep.nc Number of NC files: 75
Plot time series for total evapotranspiration (total ET)¶
In [12]:
%matplotlib inline
import os
import xarray as xr
import pandas as pd
import matplotlib.pyplot as plt
from jupyterthemes import jtplot
import seaborn as sns
import numpy as np
def calc_total_et(et_output_df):
# Total Evapotranspiration = Canopy Transpiration + Canopy Evaporation + Ground Evaporation
# Change unit from kgm-2s-1 to mm/hr (mulpitle 3600)
total_et_data = (et_output_df['scalarCanopyTranspiration'] + et_output_df['scalarCanopyEvaporation'] + et_output_df['scalarGroundEvaporation'])*3600
# create dates(X-axis) attribute from ouput netcdf
dates = total_et_data.coords['time'].data
# create data value(Y-axis) attribute from ouput netcdf
data_values = total_et_data.data
# create two dimensional tabular data structure
total_et_df = pd.DataFrame(data_values, index=dates)
# round time to nearest hour (ex. 2006-10-01T00:59:59.99 -> 2006-10-01T01:00:00)
total_et_df.index = total_et_df.index.round("H")
# set the time period to display plot
total_et_df = total_et_df.loc["2006-07-01":"2007-08-20"]
# resample data by the average value hourly
total_et_df_hourly = total_et_df.resample("H").mean()
# resample data by the average for hour of day
total_et_by_hour = total_et_df_hourly.groupby(total_et_df_hourly.index.hour).mean()
return total_et_by_hour
def plot_ET(nc_list):
dataset_list = [calc_total_et(xr.open_dataset(nc)) for nc in nc_list]
ET_Combine = pd.concat(dataset_list, axis=1)
ET_Combine_Graph = ET_Combine.plot()
# invert y axis
ET_Combine_Graph.invert_yaxis()
# add x, y label
ET_Combine_Graph.set(xlabel='Time of day (hr)', ylabel='Total evapotranspiration (mm h-1) ')
# show up the legend
legend = []
for nc in nc_list:
legend.append(os.path.basename(nc))
ET_Combine_Graph.legend(legend, loc='center left', bbox_to_anchor=(1.0, 0.5))
jtplot.figsize(x=10, y=10)
How do different Leaf Area Index (summerLAI) values affect total ET?¶
In [13]:
subset = [x for x in sorted_list if 'BallBerry++rootDistExp=0.21' in x]
plot_ET(subset)
How do different stomatal resistance parameterizations affect total ET?¶
In [14]:
subset = [x for x in sorted_list if 'rootDistExp=0.21++summerLAI=4.01' in x]
plot_ET(subset)
Cleanup¶
In [15]:
! rm -rvf {unzip_dir} {job_dir}
removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/data/forcingData/forcing_above_aspen.nc' removed directory '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/data/forcingData' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/data/reynolds_geojson_latlon.geojson' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/data/validationData/ReynoldsCreek_eddyFlux.nc' removed directory '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/data/validationData' removed directory '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/data' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/installTestCases_local.sh' removed directory '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/output' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/GENPARM.TBL' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/dos2unix.sh' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/Model_Output.txt' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/summa_zBasinModelVarMeta.txt' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/summa_zBasinParamMeta.txt' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/summa_zCategoryMeta.txt' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/summa_zForceMeta.txt' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/summa_zLocalAttributeMeta.txt' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/summa_zLocalModelIndexMeta.txt' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/summa_zLocalModelVarMeta.txt' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/summa_zLocalParamMeta.txt' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/summa_zModelIndexMeta.txt' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/summa_zParamMeta.txt' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/summa_zTimeMeta.txt' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/var_lookup.f90' removed directory '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/MPTABLE.TBL' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/SOILPARM.TBL' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/summa_fileManager_riparianAspenSimpleResistance.txt' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/summa_zBasinParamInfo.txt' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/summa_zDecisions_riparianAspenSimpleResistance.txt' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/summa_zForcingFileList_riparianAspen.txt' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/summa_zForcingInfo_riparianAspen.txt' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/summa_zInitialCond.nc' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/summa_zLocalAttributes_riparianAspen.nc' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/summa_zLocalParamInfo.txt' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/summa_zParamTrial_riparianAspen.nc' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/VEGPARM.TBL' removed directory '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings' removed '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/summa_options.json' removed directory '/home/jovyan/work/workspace/tmp5o_3hms7/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron' removed directory '/home/jovyan/work/workspace/tmp5o_3hms7' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/data/forcingData/forcing_above_aspen.nc' removed directory '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/data/forcingData' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/data/reynolds_geojson_latlon.geojson' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/data/validationData/ReynoldsCreek_eddyFlux.nc' removed directory '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/data/validationData' removed directory '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/data' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/installTestCases_local.sh' removed directory '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/output' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/GENPARM.TBL' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/dos2unix.sh' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/Model_Output.txt' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/summa_zBasinModelVarMeta.txt' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/summa_zBasinParamMeta.txt' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/summa_zCategoryMeta.txt' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/summa_zForceMeta.txt' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/summa_zLocalAttributeMeta.txt' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/summa_zLocalModelIndexMeta.txt' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/summa_zLocalModelVarMeta.txt' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/summa_zLocalParamMeta.txt' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/summa_zModelIndexMeta.txt' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/summa_zParamMeta.txt' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/summa_zTimeMeta.txt' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta/var_lookup.f90' removed directory '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/meta' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/MPTABLE.TBL' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/SOILPARM.TBL' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/summa_fileManager_riparianAspenSimpleResistance.txt' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/summa_zBasinParamInfo.txt' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/summa_zDecisions_riparianAspenSimpleResistance.txt' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/summa_zForcingFileList_riparianAspen.txt' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/summa_zForcingInfo_riparianAspen.txt' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/summa_zInitialCond.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/summa_zLocalAttributes_riparianAspen.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/summa_zLocalParamInfo.txt' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/summa_zParamTrial_riparianAspen.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings/VEGPARM.TBL' removed directory '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/settings' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/summa_options.json' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/runSumma.py' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron/summa.sbatch' removed directory '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/SummaModel_ReynoldsAspenStand_StomatalResistance_sopron' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/runinfo.txt' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.01++summerLAI=0.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.01++summerLAI=2.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.01++summerLAI=4.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.01++summerLAI=6.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.01++summerLAI=8.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.21++summerLAI=0.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.21++summerLAI=2.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.21++summerLAI=4.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.21++summerLAI=6.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.21++summerLAI=8.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.41++summerLAI=0.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.41++summerLAI=2.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.41++summerLAI=4.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.41++summerLAI=6.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.41++summerLAI=8.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.61++summerLAI=0.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.61++summerLAI=2.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.61++summerLAI=4.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.61++summerLAI=6.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.61++summerLAI=8.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.81++summerLAI=0.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.81++summerLAI=2.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.81++summerLAI=4.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.81++summerLAI=6.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++BallBerry++rootDistExp=0.81++summerLAI=8.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.01++summerLAI=0.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.01++summerLAI=2.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.01++summerLAI=4.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.01++summerLAI=6.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.01++summerLAI=8.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.21++summerLAI=0.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.21++summerLAI=2.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.21++summerLAI=4.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.21++summerLAI=6.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.21++summerLAI=8.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.41++summerLAI=0.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.41++summerLAI=2.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.41++summerLAI=4.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.41++summerLAI=6.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.41++summerLAI=8.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.61++summerLAI=0.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.61++summerLAI=2.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.61++summerLAI=4.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.61++summerLAI=6.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.61++summerLAI=8.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.81++summerLAI=0.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.81++summerLAI=2.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.81++summerLAI=4.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.81++summerLAI=6.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++Jarvis++rootDistExp=0.81++summerLAI=8.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.01++summerLAI=0.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.01++summerLAI=2.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.01++summerLAI=4.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.01++summerLAI=6.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.01++summerLAI=8.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.21++summerLAI=0.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.21++summerLAI=2.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.21++summerLAI=4.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.21++summerLAI=6.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.21++summerLAI=8.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.41++summerLAI=0.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.41++summerLAI=2.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.41++summerLAI=4.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.41++summerLAI=6.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.41++summerLAI=8.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.61++summerLAI=0.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.61++summerLAI=2.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.61++summerLAI=4.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.61++summerLAI=6.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.61++summerLAI=8.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.81++summerLAI=0.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.81++summerLAI=2.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.81++summerLAI=4.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.81++summerLAI=6.01++_timestep.nc' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output/vegImpactsTranspire_output_++simpleResistance++rootDistExp=0.81++summerLAI=8.01++_timestep.nc' removed directory '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/output' removed '/home/jovyan/work/workspace/Summa_1576878535_f3a913df/slurm-3462846.out' removed directory '/home/jovyan/work/workspace/Summa_1576878535_f3a913df'